UNMC Biomedical Informatics & Molecular Modeling Facility
 
HOME
About
Resources
Chargeback
List of Journals
Education
Tools
Databases
Contact Us
 
 S E A R C H
 

 

Recent Articles:

Simon Sherman, Oleg Shats, Elizabeth Fleissner, George Bascom, Kevin Yiee, Mehmet Copur, Kate Crow, James Rooney, Zubeena Mateen, Marsha A. Ketcham, Jianmin Feng, Alexander Sherman, Michael Gleason, Leo Kinarsky, Edibaldo Silva-Lopez, James Edney, Elizabeth Reed, Ann Berger and Kenneth Cowan. Multicenter Breast Cancer Collaborative Registry. Cancer Informatics 2011:10 217-226

Simon Sherman, Oleg Shats, Marsha A. Ketcham, Michelle A. Anderson, David C. Whitcomb, Henry T. Lynch, Paola Ghiorzo, Wendy S. Rubinstein, Aaron R. Sasson, William E. Grizzle, Gleb Haynatzki, Jianmin Feng, Alexander Sherman, Leo Kinarsky and Randall E. Brand. PCCR: Pancreatic Cancer Collaborative Registry. Cancer Informatics 2011:10 83–91.

 
 
Eppley Institute for Research in Cancer and Allied Diseases
 

Powered by PGX Webmaster ™,
Copyright 2004-2012 Progenomix, Inc.

The UNMC Biomedical Informatics and Molecular Modeling Core Facility  provides UNMC researchers with computational and informatics tools, software packages, computational clusters, servers, and workstations. The facility's hardware and software resources are available to the end-users 24/7.
AREA OF EXPERTISE:
   DATA AND INFORMATION MANAGEMENT:
  • development of databases, data warehouses and web-based applications;
  • database searching and data retrieval;
  • data sharing;
  • statistical analyses.
   MOLECULAR MODELING:
  • protein structure/property prediction and analysis;
  • homology modeling of proteins;
  • molecular docking;
  • molecular dynamics simulations;
  • QSAR analysis;
  • antigenic epitope prediction.
The staff of the facility:
  • consults users in utilizing bioinformatics and biomedical informatics tools and methods, molecular modeling techniques;
  • participates in collaborative research;
  • teaches bioinformatics-related disciplines;
  • develops and supports cancer-specific registries;
  • deploys the cancer Biomedical Informatics Grid (caBIG®) infrastructure and tools;
  • educates investigators on the requirements, standards and approaches that enhance data collection, management, mining, and sharing.

Open New Account

Cancer Registries

Pancreatic (PCCR)
PCCR Report
Breast (BCCR)
Thyroid (TCCR)
Lung (NeED-IT)
Normal Controls (GPHID)
Reports (on-campus access)
Pancreatectomy Nomogram

Management Systems

caTissue
C3D
UNMC Cancer Clinical Trials
Molecular Biology Core
Microarray Core
Eppley Institute Grants

Links

UNMC Eppley Cancer Center
Eppley Cancer Institute
UNMC Microarray Resources
UNMC Cancer Clinical Trials
NICLS
caBIG
caGrid portal

Workstations (Intranet):

Octane
Molgraf
Primus
Bioscott

Clusters (Intranet):

modys
beowulf

BIOINFORMATICS
The term "Bioinformatics" refers to both the development and the use of mathematical and computational methods to assist in understanding and utilizing structural as well as functional information on biologically important molecules.