UNMC Biomedical Informatics & Molecular Modeling Facility
 
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Recent Articles:

Simon Sherman, Oleg Shats, Elizabeth Fleissner, George Bascom, Kevin Yiee, Mehmet Copur, Kate Crow, James Rooney, Zubeena Mateen, Marsha A. Ketcham, Jianmin Feng, Alexander Sherman, Michael Gleason, Leo Kinarsky, Edibaldo Silva-Lopez, James Edney, Elizabeth Reed, Ann Berger and Kenneth Cowan. Multicenter Breast Cancer Collaborative Registry. Cancer Informatics 2011:10 217-226

Simon Sherman, Oleg Shats, Marsha A. Ketcham, Michelle A. Anderson, David C. Whitcomb, Henry T. Lynch, Paola Ghiorzo, Wendy S. Rubinstein, Aaron R. Sasson, William E. Grizzle, Gleb Haynatzki, Jianmin Feng, Alexander Sherman, Leo Kinarsky and Randall E. Brand. PCCR: Pancreatic Cancer Collaborative Registry. Cancer Informatics 2011:10 83–91.

 
 
Eppley Institute for Research in Cancer and Allied Diseases
 

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The UNMC Biomedical Informatics  Core Facility  provides UNMC researchers with computational and informatics tools, software packages, computational clusters, servers, and workstations. The facility's hardware and software resources are available to the end-users 24/7.
AREA OF EXPERTISE:
   DATA AND INFORMATION MANAGEMENT:
  • development of databases, data warehouses and web applications;
  • database searching and data retrieval;
  • data sharing;
  • statistical analyses.
   MOLECULAR MODELING:
  • protein structure/property prediction and analysis;
  • homology modeling of proteins;
  • molecular docking;
  • molecular dynamics simulations;
  • QSAR analysis;
  • antigenic epitope prediction.
The staff of the facility:
  • consults users in utilizing bioinformatics and biomedical informatics tools and methods, molecular modeling techniques;
  • participates in collaborative research;
  • teaches bioinformatics-related disciplines;
  • develops and supports cancer-specific registries;
  • educates investigators on the requirements, standards and approaches that enhance data collection, management, mining, and sharing.

Open New Account

Cancer Registries

Pancreatic (PCCR)
Breast (BCCR)
Thyroid (TCCR)
Lung (NeED-IT)
Normal Controls (GPHID)
Reports (on-campus access)
PCCR Report
PDAC Prognostic Estimator

Management Systems

caTissue
C3D
Cancer Clinical Trials

Links

UNMC Eppley Cancer Center
Eppley Cancer Institute
UNMC Microarray Resources
UNMC Cancer Clinical Trials
NICLS
caBIG
caGrid portal

Workstations (Intranet):

Octane
Molgraf
Primus
Bioscott

Clusters (Intranet):

modys
beowulf

BIOMEDICAL INFORMATICS
Biomedical informatics is the interdisciplinary field that studies and pursues the effective uses of biomedical data, information, and knowledge for scientific inquiry, problem solving, and decision making, motivated by efforts to improve human health.
American Medical Informatics Association (AMIA)