UNMC Bioinformatics and Molecular Modeling Facility
 
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Eppley Institute for Research in Cancer and Allied Diseases
 

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Copyright 2004-2009 Progenomix, Inc.
MAJOR RESOURCES:
   HARDWARE
32 nodes dual Xeon CPUs beowulf cluster
SGI Origin200 server; 3x SGI Octane2 and SGI Octane
Dell PowerEdge 2650, 1750, 4400 and 8x1400 servers
Dell PowerVault 1TB Network Attached Storage
Two Spectralogic AIT-3 tape backup libraries
Polycom videoconferencing systems
   DATABASE AND APPLICATION SERVERS
Oracle9i EE Database and Application servers
MS SQL 2000 EE Database server
Progeny Database Enterprise Server
   SOFTWARE
SYBYL molecular modeling software package with modules:
BioPolymer, Composer, Molcad, Advanced Computation, Concord, QSAR, Dynamics, Protable, MatchMaker, LeapFrog, DISCO, MM2, MM3, Triad, Dyana, Flex-X, and CScore
UNITY 3D database searching, molecular design and
   analysis tools
Insight II - 3D graphical environment for molecular
   modeling with modules:
Discover, Biopolymer, and Profiles-3D
Amber 7.0 - molecular dynamics simulations software
ArrayPack (GeneSight - Multivariate Statistical Analysis
    Software; ImaGene - Semi-Automated Array Image
    Analysis Software; CloneTracker - Virtual Array Design
    and Data Management Software)
GEMTools - Microarray Analysis and Data Management
   Software
Spartan 5.0 - molecular modeling software
AutoDock 3 - suite of automated docking tools